Deploying reliable deep learning techniques in interdisciplinary applications needs learned models to output accurate and ({even more importantly}) explainable predictions. Existing approaches typically explicate network outputs in a post-hoc fashion, under an implicit assumption that faithful explanations come from accurate predictions/classifications. We have an opposite claim that explanations boost (or even determine) classification. That is, end-to-end learning of explanation factors to augment discriminative representation extraction could be a more intuitive strategy to inversely assure fine-grained explainability, e.g., in those neuroimaging and neuroscience studies with high-dimensional data containing noisy, redundant, and task-irrelevant information. In this paper, we propose such an explainable geometric deep network dubbed as NeuroExplainer, with applications to uncover altered infant cortical development patterns associated with preterm birth. Given fundamental cortical attributes as network input, our NeuroExplainer adopts a hierarchical attention-decoding framework to learn fine-grained attentions and respective discriminative representations to accurately recognize preterm infants from term-born infants at term-equivalent age. NeuroExplainer learns the hierarchical attention-decoding modules under subject-level weak supervision coupled with targeted regularizers deduced from domain knowledge regarding brain development. These prior-guided constraints implicitly maximizes the explainability metrics (i.e., fidelity, sparsity, and stability) in network training, driving the learned network to output detailed explanations and accurate classifications. Experimental results on the public dHCP benchmark suggest that NeuroExplainer led to quantitatively reliable explanation results that are qualitatively consistent with representative neuroimaging studies.

During X-ray computed tomography (CT) scanning, metallic implants carrying with patients often lead to adverse artifacts in the captured CT images and then impair the clinical treatment. Against this metal artifact reduction (MAR) task, the existing deep-learning-based methods have gained promising reconstruction performance. Nevertheless, there is still some room for further improvement of MAR performance and generalization ability, since some important prior knowledge underlying this specific task has not been fully exploited. Hereby, in this paper, we carefully analyze the characteristics of metal artifacts and propose an orientation-shared convolution representation strategy to adapt the physical prior structures of artifacts, i.e., rotationally symmetrical streaking patterns. The proposed method rationally adopts Fourier-series-expansion-based filter parametrization in artifact modeling, which can better separate artifacts from anatomical tissues and boost the model generalizability. Comprehensive experiments executed on synthesized and clinical datasets show the superiority of our method in detail preservation beyond the current representative MAR methods. Code will be available at \url{https://github.com/hongwang01/OSCNet}

Large language models (LLMs) have demonstrated excellent zero-shot generalization to new language tasks. However, effective utilization of LLMs for zero-shot visual question-answering (VQA) remains challenging, primarily due to the modality disconnection and task disconnection between LLM and VQA task. End-to-end training on vision and language data may bridge the disconnections, but is inflexible and computationally expensive. To address this issue, we propose \emph{Img2Prompt}, a plug-and-play module that provides the prompts that can bridge the aforementioned modality and task disconnections, so that LLMs can perform zero-shot VQA tasks without end-to-end training. In order to provide such prompts, we further employ LLM-agnostic models to provide prompts that can describe image content and self-constructed question-answer pairs, which can effectively guide LLM to perform zero-shot VQA tasks. Img2Prompt offers the following benefits: 1) It can flexibly work with various LLMs to perform VQA. 2)~Without the needing of end-to-end training, it significantly reduces the cost of deploying LLM for zero-shot VQA tasks. 3) It achieves comparable or better performance than methods relying on end-to-end training. For example, we outperform Flamingo~\cite{Deepmind:Flamingo2022} by 5.6\% on VQAv2. On the challenging A-OKVQA dataset, our method even outperforms few-shot methods by as much as 20\%.

Current medical image synthetic augmentation techniques rely on intensive use of generative adversarial networks (GANs). However, the nature of GAN architecture leads to heavy computational resources to produce synthetic images and the augmentation process requires multiple stages to complete. To address these challenges, we introduce a novel generative meta curriculum learning method that trains the task-specific model (student) end-to-end with only one additional teacher model. The teacher learns to generate curriculum to feed into the student model for data augmentation and guides the student to improve performance in a meta-learning style. In contrast to the generator and discriminator in GAN, which compete with each other, the teacher and student collaborate to improve the student's performance on the target tasks. Extensive experiments on the histopathology datasets show that leveraging our framework results in significant and consistent improvements in classification performance.

Deep learning networks have demonstrated state-of-the-art performance on medical image analysis tasks. However, the majority of the works rely heavily on abundantly labeled data, which necessitates extensive involvement of domain experts. Vision transformer (ViT) based generative adversarial networks (GANs) recently demonstrated superior potential in general image synthesis, yet are less explored for histopathology images. In this paper, we address these challenges by proposing a pure ViT-based conditional GAN model for histopathology image synthetic augmentation. To alleviate training instability and improve generation robustness, we first introduce a conditioned class projection method to facilitate class separation. We then implement a multi-loss weighing function to dynamically balance the losses between classification tasks. We further propose a selective augmentation mechanism to actively choose the appropriate generated images and bring additional performance improvements. Extensive experiments on the histopathology datasets show that leveraging our synthetic augmentation framework results in significant and consistent improvements in classification performance.

Unsupervised pre-training on millions of digital-born or scanned documents has shown promising advances in visual document understanding~(VDU). While various vision-language pre-training objectives are studied in existing solutions, the document textline, as an intrinsic granularity in VDU, has seldom been explored so far. A document textline usually contains words that are spatially and semantically correlated, which can be easily obtained from OCR engines. In this paper, we propose Wukong-Reader, trained with new pre-training objectives to leverage the structural knowledge nested in document textlines. We introduce textline-region contrastive learning to achieve fine-grained alignment between the visual regions and texts of document textlines. Furthermore, masked region modeling and textline-grid matching are also designed to enhance the visual and layout representations of textlines. Experiments show that our Wukong-Reader has superior performance on various VDU tasks such as information extraction. The fine-grained alignment over textlines also empowers Wukong-Reader with promising localization ability.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Given a document in a source language, cross-lingual summarization (CLS) aims at generating a concise summary in a different target language. Unlike monolingual summarization (MS), naturally occurring source-language documents paired with target-language summaries are rare. To collect large-scale CLS samples, existing datasets typically involve translation in their creation. However, the translated text is distinguished from the text originally written in that language, i.e., translationese. Though many efforts have been devoted to CLS, none of them notice the phenomenon of translationese. In this paper, we first confirm that the different approaches to constructing CLS datasets will lead to different degrees of translationese. Then we design systematic experiments to investigate how translationese affects CLS model evaluation and performance when it appears in source documents or target summaries. In detail, we find that (1) the translationese in documents or summaries of test sets might lead to the discrepancy between human judgment and automatic evaluation; (2) the translationese in training sets would harm model performance in the real scene; (3) though machine-translated documents involve translationese, they are very useful for building CLS systems on low-resource languages under specific training strategies. Furthermore, we give suggestions for future CLS research including dataset and model developments. We hope that our work could let researchers notice the phenomenon of translationese in CLS and take it into account in the future.

Fusing camera with LiDAR is a promising technique to improve the accuracy of 3D detection due to the complementary physical properties. While most existing methods focus on fusing camera features directly with raw LiDAR point clouds or shallow 3D features, it is observed that direct deep 3D feature fusion achieves inferior accuracy due to feature misalignment. The misalignment that originates from the feature aggregation across large receptive fields becomes increasingly severe for deep network stages. In this paper, we propose PathFusion to enable path-consistent LiDAR-camera deep feature fusion. PathFusion introduces a path consistency loss between shallow and deep features, which encourages the 2D backbone and its fusion path to transform 2D features in a way that is semantically aligned with the transform of the 3D backbone. We apply PathFusion to the prior-art fusion baseline, Focals Conv, and observe more than 1.2\% mAP improvements on the nuScenes test split consistently with and without testing-time augmentations. Moreover, PathFusion also improves KITTI AP3D (R11) by more than 0.6% on moderate level.

We present Pre-trained Machine Reader (PMR), a novel method to retrofit Pre-trained Language Models (PLMs) into Machine Reading Comprehension (MRC) models without acquiring labeled data. PMR is capable of resolving the discrepancy between model pre-training and downstream fine-tuning of existing PLMs, and provides a unified solver for tackling various extraction tasks. To achieve this, we construct a large volume of general-purpose and high-quality MRC-style training data with the help of Wikipedia hyperlinks and design a Wiki Anchor Extraction task to guide the MRC-style pre-training process. Although conceptually simple, PMR is particularly effective in solving extraction tasks including Extractive Question Answering and Named Entity Recognition, where it shows tremendous improvements over previous approaches especially under low-resource settings. Moreover, viewing sequence classification task as a special case of extraction task in our MRC formulation, PMR is even capable to extract high-quality rationales to explain the classification process, providing more explainability of the predictions.